Package: helixvis 1.0.1

helixvis: Visualize Alpha-Helical Peptide Sequences

Create publication-quality, 2-dimensional visualizations of alpha-helical peptide sequences. Specifically, allows the user to programmatically generate helical wheels and wenxiang diagrams to provide a bird's eye, top-down view of alpha-helical oligopeptides. See Wadhwa RR, et al. (2018) <doi:10.21105/joss.01008> for more information.

Authors:Raoul Wadhwa [cre, aut], Regina Stevens-Truss [aut], Vigneshwar Subramanian [aut]

helixvis_1.0.1.tar.gz
helixvis_1.0.1.zip(r-4.5)helixvis_1.0.1.zip(r-4.4)helixvis_1.0.1.zip(r-4.3)
helixvis_1.0.1.tgz(r-4.4-any)helixvis_1.0.1.tgz(r-4.3-any)
helixvis_1.0.1.tar.gz(r-4.5-noble)helixvis_1.0.1.tar.gz(r-4.4-noble)
helixvis_1.0.1.tgz(r-4.4-emscripten)helixvis_1.0.1.tgz(r-4.3-emscripten)
helixvis.pdf |helixvis.html✨
helixvis/json (API)

# Install 'helixvis' in R:
install.packages('helixvis', repos = c('https://rrrlw.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/rrrlw/helixvis/issues

Datasets:
  • sample_seq - Amino acid sequences of 5 antimicrobial peptides

On CRAN:

biochemistryhelical-wheelspeptide-sequencesvisualizationwenxiang-diagrams

4.00 score 2 stars 3 scripts 159 downloads 2 exports 36 dependencies

Last updated 6 years agofrom:67cccf45b6. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 01 2024
R-4.5-winOKNov 01 2024
R-4.5-linuxOKNov 01 2024
R-4.4-winOKNov 01 2024
R-4.4-macOKNov 01 2024
R-4.3-winOKNov 01 2024
R-4.3-macOKNov 01 2024

Exports:draw_wenxiangdraw_wheel

Dependencies:clicolorspacecpp11fansifarverggforceggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigpolyclipR6RColorBrewerRcppRcppEigenrlangscalessystemfontstibbletidyselecttweenrutf8vctrsviridisLitewithr

Introduction to helixvis

| Raoul R. Wadhwa, Regina Stevens-Truss | Department of Chemistry, Kalamazoo College

Rendered fromintro.Rmdusingknitr::rmarkdownon Nov 01 2024.

Last update: 2019-01-25
Started: 2018-09-25