Package: helixvis 1.0.1

helixvis: Visualize Alpha-Helical Peptide Sequences

Create publication-quality, 2-dimensional visualizations of alpha-helical peptide sequences. Specifically, allows the user to programmatically generate helical wheels and wenxiang diagrams to provide a bird's eye, top-down view of alpha-helical oligopeptides. See Wadhwa RR, et al. (2018) <doi:10.21105/joss.01008> for more information.

Authors:Raoul Wadhwa [cre, aut], Regina Stevens-Truss [aut], Vigneshwar Subramanian [aut]

helixvis_1.0.1.tar.gz
helixvis_1.0.1.zip(r-4.7)helixvis_1.0.1.zip(r-4.6)helixvis_1.0.1.zip(r-4.5)
helixvis_1.0.1.tgz(r-4.6-any)helixvis_1.0.1.tgz(r-4.5-any)
helixvis_1.0.1.tar.gz(r-4.7-any)helixvis_1.0.1.tar.gz(r-4.6-any)
helixvis_1.0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
helixvis/json (API)

# Install 'helixvis' in R:

install.packages('helixvis', repos = c('https://rrrlw.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rrrlw/helixvis/issues

Datasets:

sample_seq - Amino acid sequences of 5 antimicrobial peptides

On CRAN:

biochemistry helical-wheels peptide-sequences visualization wenxiang-diagrams

4.00 score 2 stars 4 scripts 245 downloads 2 exports 26 dependencies

Last updated from:67cccf45b6. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	OK	125
source / vignettes	OK	156
linux-release-x86_64	OK	150
macos-release-arm64	OK	96
macos-oldrel-arm64	OK	74
windows-devel	OK	78
windows-release	OK	95
windows-oldrel	OK	68
wasm-release	OK	120

Exports:draw_wenxiang draw_wheel

Dependencies:base64enc cli cpp11 farver ggforce ggplot2 glue gtable isoband jsonlite labeling lifecycle magrittr MASS polyclip R6 RColorBrewer rlang S7 scales systemfonts tidyselect tweenr vctrs viridisLite withr

Introduction to helixvis

Rendered fromintro.Rmdusingknitr::rmarkdown

Last update: 2019-01-25
Started: 2018-09-25

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Create Wenxiang diagrams to visualize alpha helical sequences.	draw_wenxiang
Create helical wheels to visualize alpha helical sequences.	draw_wheel
Quick and easy visualization of alpha-helical sequences.	helixvis-package helixvis
Amino acid sequences of 5 antimicrobial peptides	sample_seq